Index

Symbols

--chemistry solosis-cli-alignment-cellranger-count command line option --cores solosis-cli-jobrunner-command command line option --cpu solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option --create-bam solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option --debug solosis-cli command line option solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-history-clear command line option solosis-cli-history-uid command line option solosis-cli-history-view command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-irods-iget-fastqs command line option solosis-cli-irods-imeta-report command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option --expected-cells solosis-cli-scrna-cellbender command line option --gpu solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option --hours solosis-cli-history-clear command line option --job_name solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option --libraries solosis-cli-alignment-cellranger-arc-count command line option --librariesfile solosis-cli-alignment-cellranger-arc-count command line option --lines solosis-cli-history-view command line option --mem solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option

--merged_filename solosis-cli-scrna-merge-h5ad command line option --metadata solosis-cli-scrna-cellbender command line option --notebook solosis-cli-jobrunner-run_ipynb command line option --queue solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option --sample solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-irods-iget-fastqs command line option solosis-cli-irods-imeta-report command line option --sample_basedir solosis-cli-scrna-scanpy command line option --samplefile solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-irods-iget-fastqs command line option solosis-cli-irods-imeta-report command line option solosis-cli-scrna-merge-h5ad command line option solosis-cli-scrna-scanpy command line option --time solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option solosis-cli-scrna-cellbender command line option --total-droplets-included solosis-cli-scrna-cellbender command line option --version solosis-cli-alignment-cellranger-arc-count command line option solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-cellranger-vdj command line option -h solosis-cli-history-clear command line option -j solosis-cli-jobrunner-command command line option solosis-cli-jobrunner-run_ipynb command line option -n solosis-cli-history-view command line option solosis-cli-jobrunner-run_ipynb command line option

C

COMMAND_TO_EXEC solosis-cli-jobrunner-command command line option

S

solosis-cli command line option --debug solosis-cli-alignment-cellranger-arc-count command line option --cpu --create-bam --debug --gpu --libraries --librariesfile --mem --queue --time --version solosis-cli-alignment-cellranger-count command line option --chemistry --cpu --create-bam --debug --gpu --mem --queue --sample --samplefile --time --version solosis-cli-alignment-cellranger-vdj command line option --cpu --debug --gpu --mem --queue --sample --samplefile --time --version solosis-cli-history-clear command line option --debug --hours -h solosis-cli-history-uid command line option --debug UID solosis-cli-history-view command line option --debug --lines -n solosis-cli-irods-iget-cellranger command line option --cpu --debug --gpu --mem --queue --sample --samplefile --time

solosis-cli-irods-iget-fastqs command line option --debug --sample --samplefile solosis-cli-irods-imeta-report command line option --debug --sample --samplefile solosis-cli-jobrunner-command command line option --cores --cpu --job_name --mem --queue --time -j COMMAND_TO_EXEC solosis-cli-jobrunner-run_ipynb command line option --cpu --debug --gpu --job_name --mem --notebook --queue --time -j -n solosis-cli-scrna-cellbender command line option --cpu --debug --expected-cells --gpu --mem --metadata --queue --time --total-droplets-included solosis-cli-scrna-merge-h5ad command line option --merged_filename --samplefile solosis-cli-scrna-scanpy command line option --sample_basedir --samplefile

U

UID solosis-cli-history-uid command line option