Index

Symbols

--create-bam solosis-cli-alignment-cellranger-arc command line option solosis-cli-alignment-cellranger-count command line option --libraries solosis-cli-alignment-cellranger-arc command line option --librariesfile solosis-cli-alignment-cellranger-arc command line option --merged_filename solosis-cli-sc-rna-merge-h5ad command line option --overwrite solosis-cli-irods-iget-cellranger command line option --retainbam solosis-cli-irods-iget-cellranger command line option --sample solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-starsolo command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-irods-iget-fastqs command line option

--sample_basedir solosis-cli-sc-rna-scanpy command line option --samplefile solosis-cli-alignment-cellranger-count command line option solosis-cli-alignment-starsolo command line option solosis-cli-irods-iget-cellranger command line option solosis-cli-irods-iget-fastqs command line option solosis-cli-sc-rna-cellbender command line option solosis-cli-sc-rna-merge-h5ad command line option solosis-cli-sc-rna-scanpy command line option --total_droplets_included solosis-cli-sc-rna-cellbender command line option --version solosis-cli command line option solosis-cli-alignment-cellranger-arc command line option solosis-cli-alignment-cellranger-count command line option

S

solosis-cli command line option --version solosis-cli-alignment-cellranger-arc command line option --create-bam --libraries --librariesfile --version solosis-cli-alignment-cellranger-count command line option --create-bam --sample --samplefile --version solosis-cli-alignment-starsolo command line option --sample --samplefile solosis-cli-irods-iget-cellranger command line option --overwrite --retainbam --sample --samplefile

solosis-cli-irods-iget-fastqs command line option --sample --samplefile solosis-cli-sc-rna-cellbender command line option --samplefile --total_droplets_included solosis-cli-sc-rna-merge-h5ad command line option --merged_filename --samplefile solosis-cli-sc-rna-scanpy command line option --sample_basedir --samplefile