Input File

Follow these instructions to populate input files to successfully run the solosis CLI.

Populate Samplefile

This is the input file can be a comma-separated variable .csv or tab-separated variable .tsv file:

This input file is an expected input on any command using the --samplefile argument.

NOTE: this input file can include any number of columns, so long as:

sample_id
pBCN14634207
pBCN14634303

Cell RangerARC requires a different input file, a libraries file, which is a comma-separated variable csv file.

csv file libraries.csv which includes library type of each sample (e.g. GEX or ATAC)

fastqs	sample	library_type
/lustre/scratch126/cellgen/team298/tmp/HCA_rFSKI14910984	HCA_rFSKI14910984	Gene Expression
/lustre/scratch126/cellgen/team298/tmp/HCA_rFSKI14910888	HCA_rFSKI14910888	Chromatin Accessibility