Index

B

batch_process_array() (in module process_h5ad) batch_process_sparse() (in module process_h5ad) build_config module

build_config_multimodal module build_options() (in module build_config) build_raster_options() (in module build_config) (in module build_config_multimodal)

C

concat_views() (in module build_config_multimodal) consolidate() (in module consolidate_md) consolidate_md module

constants module

G

get_metadata() (in module ome_zarr_metadata)

H

h5ad_to_zarr() (in module process_h5ad)

I

integrate_anndata module

integrate_image module

M

module build_config build_config_multimodal consolidate_md constants integrate_anndata integrate_image ome_zarr_metadata process_h5ad process_molecules process_spaceranger process_xenium

O

ome_zarr_metadata module

P

preprocess_anndata() (in module process_h5ad) process_h5ad module process_molecules module

process_spaceranger module process_xenium module

S

spaceranger_to_anndata() (in module process_spaceranger)

spaceranger_to_zarr() (in module process_spaceranger)

T

tsv_to_json() (in module process_molecules)

V

visium_label() (in module process_spaceranger)

W

write_json() (in module build_config) (in module build_config_multimodal)

X

xenium_label() (in module process_xenium)

xenium_to_anndata() (in module process_xenium) xenium_to_zarr() (in module process_xenium)